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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BLCA cis rs4803468 1 rs6508977 chr19:41909346 B3GNT8 chr19:41931265-41934635:- -0.21 -3.9 0.000114 Height
BLCA cis rs2076028 1 rs6519120 chr22:38991393 JOSD1 chr22:39081549-39096459:- 0.24 3.88 0.000122 Resting heart rate
BLCA cis rs2273 1 rs6532078 chr4:76920809 NAAA chr4:76831809-76862166:- -0.37 -6.05 3.38E-9 Longevity
BLCA cis rs4699052 1 rs6533059 chr4:104133376 MANBA chr4:103552644-103682151:- 0.28 4.49 9.34E-6 Testicular germ cell tumor
BLCA cis rs4699052 1 rs6533060 chr4:104139996 MANBA chr4:103552644-103682151:- 0.26 4.22 2.99E-5 Testicular germ cell tumor
BLCA cis rs6545883 1 rs6545883 chr2:61772257 AHSA2 chr2:61404553-61414058:+ -0.17 -4.75 2.85E-6 Tuberculosis
BLCA cis rs6545883 1 rs6545883 chr2:61772257 C2orf74 chr2:61372243-61391964:+ 0.33 5.71 2.32E-8 Tuberculosis
BLCA cis rs9309473 1 rs6546835 chr2:73664715 ALMS1P chr2:73872046-73912692:+ 0.4 5.93 6.67E-9 Metabolite levels
BLCA cis rs9309473 1 rs6546836 chr2:73677833 ALMS1P chr2:73872046-73912692:+ 0.38 5.79 1.47E-8 Metabolite levels
BLCA cis rs9309473 1 rs6546837 chr2:73677898 ALMS1P chr2:73872046-73912692:+ 0.39 5.82 1.23E-8 Metabolite levels
BLCA cis rs9309473 1 rs6546838 chr2:73679280 ALMS1P chr2:73872046-73912692:+ 0.39 5.82 1.23E-8 Metabolite levels
BLCA cis rs9309473 1 rs6546839 chr2:73680508 ALMS1P chr2:73872046-73912692:+ 0.39 5.82 1.23E-8 Metabolite levels
BLCA cis rs6547741 1 rs6547734 chr2:27830990 C2orf16 chr2:27799389-27805588:+ 0.23 4.04 6.46E-5 Oral cavity cancer
BLCA cis rs4372836 1 rs6547872 chr2:28978074 TRMT61B chr2:29072690-29093175:- -0.32 -5.68 2.7E-8 Body mass index
BLCA cis rs2149423 1 rs6563380 chr13:36770422 SOHLH2 chr13:36742347-36871992:- 0.26 4.43 1.23E-5 Glucose homeostasis traits